PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G373500.3
Common NameB456_007G373500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 448aa    MW: 50664.8 Da    PI: 6.9124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G373500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09327374448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E  +lvd+++++G g+W+ I + +    + Rt+ +++++w+++l
  Gorai.007G373500.3 327 WTLMEVIKLVDGIAKYGVGRWTNIKKLLFassTYRTPVDLRDKWRNLL 374
                         **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-12319378IPR009057Homeodomain-like
PROSITE profilePS5129412.824319378IPR017930Myb domain
SuperFamilySSF466891.12E-15321392IPR009057Homeodomain-like
SMARTSM007171.6E-9323376IPR001005SANT/Myb domain
CDDcd116601.65E-16325375No hitNo description
PfamPF002495.7E-7326374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSA DGILCFGNEN  60
IEKHLKMEDF SCAFDYGWKI SSGGLDSIHG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL  120
SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESSIATV  180
RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSSI EHVQDLDESD DDEKPLKRLR  240
KPTRRYIEEF SRNSTMEESK SHKIQPQEEF PQVPSESQPR RGCPKKIVLK SELESDYELS  300
ASESEDGRKR TKRSKTACDR RKHQKMWTLM EVIKLVDGIA KYGVGRWTNI KKLLFASSTY  360
RTPVDLRDKW RNLLRSSSVQ ENNRREVENH PKHAVRPLPK PVVRRIRELA TIHPYPKVSS  420
VDYVPSSEQP TTKGTPVYYR ARNLRRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435185.10.0PREDICTED: uncharacterized protein LOC105761804
TrEMBLA0A0D2TT380.0A0A0D2TT38_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-25TRF-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]